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BioIndustry-SummerWebinar24

TRANSFORM

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Transcript

Summer Webinar

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29-30 August 2024

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Summer Webinar

29-30 August 2024

Day 1

Thursday August 29th 2024

Day 2

Friday August 30th 2024

Videos

Bio

Speakers

registration mandatory

Day 2

Friday August 30th 2024

Thursday, August 29th, 2024

Day 1

Videos

Introduction

Michael O'Donohue - INRAE

10:45

Bio

Speakers

Trusted Research Environments for Safe Access to Sensitive Data

Christian Cole - DUNDEE

11:00

Andy Rae - UNOTT

Break

12:00

What is a digital twin?

Antonis Kokossis - NTUA

14:00

Break

15:00

Digitalization of pilot plants to enhance research and engineering education

Jacob Kjøbsted Huusom - DTU

15:15

Break

16:00

DeCYPher - Data Management and Links to Bioindustry 4.0

Marjan De Mey - UGENT

16:15

End

17:00

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Day 1

Thursday August 29th 2024

Friday, August 30th, 2024

Day 2

Videos

Bio

Speakers

How the PO2/TransformON and FermentON domain ontologies can help us achieve interoperability and reuse of data on (bio)processes

Magalie Weber - INRAE

14:00

Liliana Ibanescu - INRAE

Break

15:00

After BioIndustry ? Discussion about call opportunities*

Michael O'Donohue - INRAE

15:15

* Restricted to the BioIndustry 4.0 consortium members

End

16:00

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Videos

Bio

Speakers

Day 1

Thursday August 29th 2024

Day 2

Friday August 30th 2024

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Speakers

Bio

Day 1

Thursday August 29th 2024

Day 2

Friday August 30th 2024

Videos

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Antonis Kokossis

NTUA - National Technical University of Athens Professor of Process Systems Engineering

Professor Kokossis holds a Diploma in Chemical Engineering from NTUA and a PhD from Princeton University. He returned to his alma mater in 2009 following an overseas academic career in UK at the University of Manchester (formerly UMIST). He holds expertise in process systems design and process integration, recently with a strong emphasis on renewable energy systems, process intensification and the design of biorefineries and industrial symbiosis networks. His research has addressed the design of multiphase reactors, complex separation and reactive-separation systems, energy and power networks, and environmental problems across a wide spectrum of applications (water reuse, recycle, and regeneration systems, wastewater management, gasification, waste to energy projects). He has established collaboration with several industrial companies (UOP, ICI, Bayer, Mitsubishi, Exxon, Eastman, MW Kellogg, BP Oil, Unilever, Chimar, BPF, CIMV, DSM, Arkema, Granherne, Linnhoff-March) and graduated 28 PhD and 50 MSc students. He holds over 300 communications in international conferences, and 80 invited lectures in conferences universities, and multinational companies. He is National Representative of the International Energy Agency (IEA), the National Representative of the IBISBA EU research infrastructure on Industrial Biotechnology, the Greek Secretary for Research and Technology in Climate Change (GSRT), and the Computer Aided Process Engineering (CAPE) Group of the European Federation of Chemical Engineering (EFCE). Since 2020 he is the scientific director of Symbiolabs, a spin-off company that relies on AI and data technologies to promote renewable applications and social engagement in the context of circular economy. He is founder and Chair of the Sustainability Section at EFCE and an elected member of the Executive Board of Trustees at the European Federation of Chemical Engineering (EFCE).

Marjan De Mey

Ghent University Director, Centre of Synthetic Biology (CSB)

Since 2011 Marjan De Mey holds a position as professor in Metabolic Engineering at the faculty Bioscience Engineering of Ghent University where she leads the Metabolic Engineering (MEMO) group. Her research is situated at the forefront of industrial biotechnology, metabolic engineering and synthetic biology. In 2014 she became director of the Centre of Synthetic Biology (CSB) at Ghent University.

Antonis Kokossis

NTUA - National Technical University of Athens Professor of Process Systems Engineering

Professor Kokossis holds a Diploma in Chemical Engineering from NTUA and a PhD from Princeton University. He returned to his alma mater in 2009 following an overseas academic career in UK at the University of Manchester (formerly UMIST). He holds expertise in process systems design and process integration, recently with a strong emphasis on renewable energy systems, process intensification and the design of biorefineries and industrial symbiosis networks. His research has addressed the design of multiphase reactors, complex separation and reactive-separation systems, energy and power networks, and environmental problems across a wide spectrum of applications (water reuse, recycle, and regeneration systems, wastewater management, gasification, waste to energy projects). He has established collaboration with several industrial companies (UOP, ICI, Bayer, Mitsubishi, Exxon, Eastman, MW Kellogg, BP Oil, Unilever, Chimar, BPF, CIMV, DSM, Arkema, Granherne, Linnhoff-March) and graduated 28 PhD and 50 MSc students. He holds over 300 communications in international conferences, and 80 invited lectures in conferences universities, and multinational companies. He is National Representative of the International Energy Agency (IEA), the National Representative of the IBISBA EU research infrastructure on Industrial Biotechnology, the Greek Secretary for Research and Technology in Climate Change (GSRT), and the Computer Aided Process Engineering (CAPE) Group of the European Federation of Chemical Engineering (EFCE). Since 2020 he is the scientific director of Symbiolabs, a spin-off company that relies on AI and data technologies to promote renewable applications and social engagement in the context of circular economy. He is founder and Chair of the Sustainability Section at EFCE and an elected member of the Executive Board of Trustees at the European Federation of Chemical Engineering (EFCE).

Jakob Kjøbsted Huusom

DTU - Technical University of Denmark Associate Professor

Jakob Kjøbsted Huusom is an Associate Professor at DTU Chemical Engineering, part of the Department of Chemical and Biochemical Engineering at Danmarks Tekniske Universitet. His research primarily focuses on the development and application of advanced optimization methods and systems engineering tools for chemical and biochemical production systems. Current projects include tuning algorithms for Model Predictive Control, monitoring enzymatic biodiesel production, and designing energy-efficient distillation technology.

Andy Rae

University of Nottingham

Andy Rae, based in England, United Kingdom, is currently a Software Engineer at University of Nottingham, bringing experience from previous roles at University of Nottingham, Self-employed, Film Hub Midlands and Film Hub Central East. Skilled in a variety of languages, including C#, Python, and Typescript, and experienced in developing and maintaining applications for various sectors. Andy Rae holds a 2020 - 2022 Master of Science - MS @ Nottingham Trent University. With a robust skill set that includes Project Coordination, Audience Development, Data Analysis, Film Marketing, Design and more, Andy Rae contributes valuable insights to the industry.

Liliana IBANESCU

INRAE

Liliana Ibanescu is an assistant professor in Computer Science at AgroParisTech (a French University) – The Paris Institute of Technology for Life and Environmental Sciences. Liliana is also a member of MIA Paris-Saclay- a research team from INRAE – the French National Institute for Agriculture and Environment. Liliana is co-head of the French research network on “Integration of heterogeneous data sources and ontologies”. Liliana’s research interests are in building ontologies for different domains (e.g. cheese production, product meat manufacturing) using Web Semantics standards (e.g. RDF, OWL, SPARQL) and W3C (World Wide Web Consortium) recommendations (e.g. SOSA, Time Ontology).

Marjan De Mey

Ghent University Director, Centre of Synthetic Biology (CSB)

Since 2011 Marjan De Mey holds a position as professor in Metabolic Engineering at the faculty Bioscience Engineering of Ghent University where she leads the Metabolic Engineering (MEMO) group. Her research is situated at the forefront of industrial biotechnology, metabolic engineering and synthetic biology. In 2014 she became director of the Centre of Synthetic Biology (CSB) at Ghent University.

Liliana IBANESCU

INRAE

Liliana Ibanescu is an assistant professor in Computer Science at AgroParisTech (a French University) – The Paris Institute of Technology for Life and Environmental Sciences. Liliana is also a member of MIA Paris-Saclay- a research team from INRAE – the French National Institute for Agriculture and Environment. Liliana is co-head of the French research network on “Integration of heterogeneous data sources and ontologies”. Liliana’s research interests are in building ontologies for different domains (e.g. cheese production, product meat manufacturing) using Web Semantics standards (e.g. RDF, OWL, SPARQL) and W3C (World Wide Web Consortium) recommendations (e.g. SOSA, Time Ontology).

Michael O'Donohue

INRAE Acting Director, IBISBA

Michael O’Donohue works for INRAE, France’s National Institute of Research on Agriculture, Food and the Environment. He holds a PhD in protein biochemistry from the University of Portsmouth (UK) and possesses extensive research experience in enzyme engineering and biotechnology. In INRAE, Michael is head of TRANSFORM, a 600-staff research division possessing 29 labs in France. In 2014, Michael launched a European initiative aimed at developing a more systemic approach to research in industrial biotechnology. Since then, this initiative has grown into IBISBA, a distributed European research infrastructure that gained ESFRI recognition in 2018. IBISBA currently mobilizes staff from 21 research institutions located in 10 European countries.

Andy Rae

University of Nottingham

Andy Rae, based in England, United Kingdom, is currently a Software Engineer at University of Nottingham, bringing experience from previous roles at University of Nottingham, Self-employed, Film Hub Midlands and Film Hub Central East. Skilled in a variety of languages, including C#, Python, and Typescript, and experienced in developing and maintaining applications for various sectors. Andy Rae holds a 2020 - 2022 Master of Science - MS @ Nottingham Trent University. With a robust skill set that includes Project Coordination, Audience Development, Data Analysis, Film Marketing, Design and more, Andy Rae contributes valuable insights to the industry.

Jakob Kjøbsted Huusom

DTU - Technical University of Denmark Associate Professor

Jakob Kjøbsted Huusom is an Associate Professor at DTU Chemical Engineering, part of the Department of Chemical and Biochemical Engineering at Danmarks Tekniske Universitet. His research primarily focuses on the development and application of advanced optimization methods and systems engineering tools for chemical and biochemical production systems. Current projects include tuning algorithms for Model Predictive Control, monitoring enzymatic biodiesel production, and designing energy-efficient distillation technology.

Michael O'Donohue

INRAE Acting Director, IBISBA

Michael O’Donohue works for INRAE, France’s National Institute of Research on Agriculture, Food and the Environment. He holds a PhD in protein biochemistry from the University of Portsmouth (UK) and possesses extensive research experience in enzyme engineering and biotechnology. In INRAE, Michael is head of TRANSFORM, a 600-staff research division possessing 29 labs in France. In 2014, Michael launched a European initiative aimed at developing a more systemic approach to research in industrial biotechnology. Since then, this initiative has grown into IBISBA, a distributed European research infrastructure that gained ESFRI recognition in 2018. IBISBA currently mobilizes staff from 21 research institutions located in 10 European countries.

Christian Cole

University of Dundee

Dr Christian Cole is Reader in Health Informatics at the School of Medicine, University of Dundee and is the Academic Co-Director of the Health Informatics Centre which is responsible for managing research access to NHS data in the East of Scotland. His research interests are on the themes of standardisation and access to sensitive data for research using open, transparent and reproducible methodologies.

Magalie Weber

INRAE

Magalie Weber is involved in knowledge engineering at INRAE in the BIA (Biopolymers, Interactions, Assemblies) research unit in Nantes, and is in charge of building the domain ontology covering the Transform research Division (PO2/TransformON ontology) for the engineering of food, bioproducts and residues from agri-food systems. She is also a project manager at the Direction pour la Science Ouverte (DipSO) within the Num4Sci group, where she contributes to projects related to semantics and the sharing of research data.

Magalie Weber

INRAE

Magalie Weber is involved in knowledge engineering at INRAE in the BIA (Biopolymers, Interactions, Assemblies) research unit in Nantes, and is in charge of building the domain ontology covering the Transform research Division (PO2/TransformON ontology) for the engineering of food, bioproducts and residues from agri-food systems. She is also a project manager at the Direction pour la Science Ouverte (DipSO) within the Num4Sci group, where she contributes to projects related to semantics and the sharing of research data.

Christian Cole

University of Dundee

Dr Christian Cole is Reader in Health Informatics at the School of Medicine, University of Dundee and is the Academic Co-Director of the Health Informatics Centre which is responsible for managing research access to NHS data in the East of Scotland. His research interests are on the themes of standardisation and access to sensitive data for research using open, transparent and reproducible methodologies.

Michael O'Donohue

INRAE Acting Director, IBISBA

Michael O’Donohue works for INRAE, France’s National Institute of Research on Agriculture, Food and the Environment. He holds a PhD in protein biochemistry from the University of Portsmouth (UK) and possesses extensive research experience in enzyme engineering and biotechnology. In INRAE, Michael is head of TRANSFORM, a 600-staff research division possessing 29 labs in France. In 2014, Michael launched a European initiative aimed at developing a more systemic approach to research in industrial biotechnology. Since then, this initiative has grown into IBISBA, a distributed European research infrastructure that gained ESFRI recognition in 2018. IBISBA currently mobilizes staff from 21 research institutions located in 10 European countries.