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hTLV-1 genome dashboard
We intend to feed this dashboard in the future with information on the other genomic regions in order to characterize the whole genome.
HTLV-1 Genome Dashboard is a tool created with the purpose of reuniting the information of the HTLV-1 genome.
We started with the characterization of hbz genomic region as a part of our study.
Click on the red button next to the genomic region to access the information
604
375
603
777
824
2113
1960
2778
5210
5203
6669
6686
8382
23
5'LTR
gag
pro
pol
env
pX
3'LTR
374
8882
8653
8881
9055
8301
8652
8702
HBZ SI
8690
7290
6686
HBZ
7312
6686
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Transcript

hTLV-1 genome dashboard

Click on the red button next to the genomic region to access the information

We started with the characterization of hbz genomic region as a part of our study.

HTLV-1 Genome Dashboard is a tool created with the purpose of reuniting the information of the HTLV-1 genome.

We intend to feed this dashboard in the future with information on the other genomic regions in order to characterize the whole genome.

8702

3'LTR

8652

8301

9055

8881

8653

8882

374

HBZ SI

5'LTR

8690

7290

6686

HBZ

7312

6686

pX

env

pol

pro

gag

23

8382

6686

6669

5203

5210

2778

1960

2113

824

777

603

375

604

Download the complete .xlsx file

The reading frame of hbz gene is reverse (3’-5’) but the standard notation of DNA sequences is from 5’ to 3’.Therefore, HBZ protein is encoded by the antisense strand of HTLV-1 proviral genome.

80160 240 320 400 480 560

181 161 241 321 401 481 561

HBZ: 7312-6686

Most frequent non-synonymous mutations

aminoacid

nucleotide

TTGCAACCACATCGCCTCCAGCCTCCCCTGCCAATAATTAACCTCTCCCATCAAATCCTCCTTCTCCTGCAGCAACTTCCTCCGTTCAGCCTCCAAGGACTCCACCTCGCCTTCCAACTGTCTAGTATAGCCATCAATCCCCAACTCCTGCATTTTTTCTTTCCTAGCACTATGCTGTTTCGCCTTCTCAGCCCCTTGTCTCCACTTGCGCTCACGGCGCTCCTGCTCTTCCTGCTTCCTCCTAGCGACGTCAGCGGCCTTCTTCTCCGCCCGCCTCCTGCGCCGTGCCTTCTCCTCTTCCTTCCTTTTCAAATACTCAGCGGTCTGCTTTTCCTCCTCTTTCTCCCGCTCTTTTTTTCGCTTCCTCTTCTCCTCAGCCCGTCGCTGCCGATCACGATGCGTTTCCCCGCGAGGTGGCGCTTTCTCCCCTGGAGGGCCCCGTCGCAGCCGGCCGCGGCTTTCCTCTTCTAAGGATAGCAAACCGTCAAGCACAGCTTCCTCCTCCTCCTTGTCCTTTAACTCTTCCTCCAAGGATAATAGCCCGTCCACCAATTCCTCCACCAGCAGGTCCTCCGGGCATGACACAGGCAAGCATCGAAACAGCCCTGCAGATACAAAGTTAACCAT

HBZ SI

HBZ

hTLV-1 genome dashboard hbz

HBZ SI

HBZ

Home

TTGCAACCACATCGCCTCCAGCCTCCCCTGCCAATAATTAACCTCTCCCATCAAATCCTCCTTCTCCTGCAGCAACTTCCTCCGTTCAGCCTCCAAGGACTCCACCTCGCCTTCCAACTGTCTAGTATAGCCATCAATCCCCAACTCCTGCATTTTTTCTTTCCTAGCACTATGCTGTTTCGCCTTCTCAGCCCCTTGTCTCCACTTGCGCTCACGGCGCTCCTGCTCTTCCTGCTTCCTCCTAGCGACGTCAGCGGCCTTCTTCTCCGCCCGCCTCCTGCGCCGTGCCTTCTCCTCTTCCTTCCTTTTCAAATACTCAGCGGTCTGCTTTTCCTCCTCTTTCTCCCGCTCTTTTTTTCGCTTCCTCTTCTCCTCAGCCCGTCGCTGCCGATCACGATGCGTTTCCCCGCGAGGTGGCGCTTTCTCCCCTGGAGGGCCCCGTCGCAGCCGGCCGCGGCTTTCCTCTTCTAAGGATAGCAAACCGTCAAGCACAGCTTCCTCCTCCTCCTTGTCCTTTAACTCTTCCTCCAAGGATAATAGCCCGTCCACCAATTCCTCCACCAGCAGGTCCTCCGGGCATGACACAGGCAAGCATCGAAACAGCCCTGAGGCCGCCAT

The reading frame of hbz gene is reverse (3’-5’) but the standard notation of DNA sequences is from 5’ to 3’.Therefore, HBZ protein is encoded by the antisense strand of HTLV-1 proviral genome.

HBZ SI

80160 240 320 400 480 560

181 161 241 321 401 481 561

HBZ

HBZ SI: 7290-6686 + 8702-8690

HBZ SI

HBZ

hbz

aminoacid

nucleotide

hTLV-1 genome dashboard

Home

hbz

50100 150 200

151 101 151 201

HBZ

MVNFVSAGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRLEAMWLQ

HBZ

HBZ

aminoacid

nucleotide

RRERKWRQGAE

DOMAINS

HBZ SI

KRKEEEKARRRRRAEKKAADVARRK

LRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEE

HBZ

EKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAE

PTMS

HBZ SI

MOTIFS

HBZ

hTLV-1 genome dashboard

KAKQHSARKEKMQELG

Home

hbz

GRLEAMWLQ

IDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQ

QTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELG

LRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEK

MVNFVSAGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGR

50100 150 200

151 101 151 201

HBZ

DOMAINS

HBZ

HBZ

aminoacid

nucleotide

hTLV-1 genome dashboard

HBZ SI

RRERKWRQGAE

KRKEEEKARRRRRAEKKAADVARRK

HBZ

LRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEE

EKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAE

PTMS

HBZ SI

MOTIFS

HBZ

KAKQHSARKEKMQELG

Home

hbz

RRRRR

50100 150 200

151 101 151 201

HBZ

HBZ

MOTIFS

aminoacid

nucleotide

hTLV-1 genome dashboard

VDGLL

HBZ

LDGL

KRKRKK

EQERRE

MVNFVSAGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRLEAMWLQ

HBZ SI

DOMAINS

RRERKWRQGAE

KRKEEEKARRRRRAEKKAADVARRK

HBZ

LRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEE

EKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAE

PTMS

HBZ SI

HBZ

KAKQHSARKEKMQELG

Home

hbz

THR

SLEE

50100 150 200

151 101 151 201

HBZ

HBZ

HBZ

PTMS

aminoacid

nucleotide

hTLV-1 genome dashboard

SLEE

SCPE

GLFRCL

GAEKAK

LEGEVESLEAERRKLLQEKEDL

SAR

MVNFVSAGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRLEAMWLQ

RRERKWRQGAE

HBZ SI

DOMAINS

KRKEEEKARRRRRAEKKAADVARRK

LRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEE

HBZ

EKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAE

HBZ SI

MOTIFS

HBZ

KAKQHSARKEKMQELG

Home

HBZ SI

DOMAINS

HBZ

PTMS

HBZ SI

MOTIFS

HBZ

hbz

50100 150 200

151 101 151 201

HBZ SI

MAASGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRLEAMWLQ

HBZ SI

HBZ

aminoacid

nucleotide

hTLV-1 genome dashboard

Home

HBZ SI

HBZ

PTMS

HBZ SI

MOTIFS

HBZ

hbz

EAMWLQ

YTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRL

EYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDG

GPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTA

MAASGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRR

50100 150 200

151 101 151 201

HBZ SI

DOMAINS

HBZ SI

HBZ

aminoacid

nucleotide

hTLV-1 genome dashboard

Home

HBZ SI

DOMAINS

HBZ

PTMS

HBZ SI

HBZ

hbz

RRRRR

EQERRE

KRKRKK

50100 150 200

151 101 151 201

HBZ SI

MOTIFS

HBZ SI

HBZ

aminoacid

nucleotide

hTLV-1 genome dashboard

VDGLL

LDGLL

MAASGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRLEAMWLQ

Home

DOMAINS

HBZ SI

HBZ

PTMS

HBZ SI

MOTIFS

HBZ

hbz

THR

50100 150 200

151 101 151 201

HBZ SI

HBZ SI

HBZ

aminoacid

nucleotide

hTLV-1 genome dashboard

SL

SCPE

EE

SCPE

SLEE

GLFRCL

GAEKAK

LEGEVESLEAERRKLLQEKEDL

AR

MAASGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRLEAMWLQ

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