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HTLV-1 Genome Dashboard
Khouri Lab
Created on August 6, 2020
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Transcript
hTLV-1 genome dashboard
604
375
603
777
824
2113
1960
2778
5210
5203
6669
6686
8382
23
5'LTR
gag
pro
pol
env
pX
3'LTR
374
8882
8653
8881
9055
8301
8652
6686
7312
HBZ
We intend to feed this dashboard in the future with information on the other genomic regions in order to characterize the whole genome.
HTLV-1 Genome Dashboard is a tool created with the purpose of reuniting the information of the HTLV-1 genome.
We started with the characterization of hbz genomic region as a part of our study.
HBZ SI
6686
7290
8690
8702
Click on the red button next to the genomic region to access the information
Home
hTLV-1 genome dashboard hbz
The reading frame of hbz gene is reverse (3’-5’) but the standard notation of DNA sequences is from 5’ to 3’.Therefore, HBZ protein is encoded by the antisense strand of HTLV-1 proviral genome.
HBZ: 7312-6686
nucleotide
TTGCAACCACATCGCCTCCAGCCTCCCCTGCCAATAATTAACCTCTCCCATCAAATCCTCCTTCTCCTGCAGCAACTTCCTCCGTTCAGCCTCCAAGGACTCCACCTCGCCTTCCAACTGTCTAGTATAGCCATCAATCCCCAACTCCTGCATTTTTTCTTTCCTAGCACTATGCTGTTTCGCCTTCTCAGCCCCTTGTCTCCACTTGCGCTCACGGCGCTCCTGCTCTTCCTGCTTCCTCCTAGCGACGTCAGCGGCCTTCTTCTCCGCCCGCCTCCTGCGCCGTGCCTTCTCCTCTTCCTTCCTTTTCAAATACTCAGCGGTCTGCTTTTCCTCCTCTTTCTCCCGCTCTTTTTTTCGCTTCCTCTTCTCCTCAGCCCGTCGCTGCCGATCACGATGCGTTTCCCCGCGAGGTGGCGCTTTCTCCCCTGGAGGGCCCCGTCGCAGCCGGCCGCGGCTTTCCTCTTCTAAGGATAGCAAACCGTCAAGCACAGCTTCCTCCTCCTCCTTGTCCTTTAACTCTTCCTCCAAGGATAATAGCCCGTCCACCAATTCCTCCACCAGCAGGTCCTCCGGGCATGACACAGGCAAGCATCGAAACAGCCCTGCAGATACAAAGTTAACCAT
80160 240 320 400 480 560
181 161 241 321 401 481 561
HBZ
HBZ SI
aminoacid
HBZ
HBZ SI
Most frequent non-synonymous mutations
Download the complete .xlsx file
Home
hTLV-1 genome dashboard
hbz
The reading frame of hbz gene is reverse (3’-5’) but the standard notation of DNA sequences is from 5’ to 3’.Therefore, HBZ protein is encoded by the antisense strand of HTLV-1 proviral genome.
nucleotide
HBZ
HBZ SI: 7290-6686 + 8702-8690
HBZ SI
TTGCAACCACATCGCCTCCAGCCTCCCCTGCCAATAATTAACCTCTCCCATCAAATCCTCCTTCTCCTGCAGCAACTTCCTCCGTTCAGCCTCCAAGGACTCCACCTCGCCTTCCAACTGTCTAGTATAGCCATCAATCCCCAACTCCTGCATTTTTTCTTTCCTAGCACTATGCTGTTTCGCCTTCTCAGCCCCTTGTCTCCACTTGCGCTCACGGCGCTCCTGCTCTTCCTGCTTCCTCCTAGCGACGTCAGCGGCCTTCTTCTCCGCCCGCCTCCTGCGCCGTGCCTTCTCCTCTTCCTTCCTTTTCAAATACTCAGCGGTCTGCTTTTCCTCCTCTTTCTCCCGCTCTTTTTTTCGCTTCCTCTTCTCCTCAGCCCGTCGCTGCCGATCACGATGCGTTTCCCCGCGAGGTGGCGCTTTCTCCCCTGGAGGGCCCCGTCGCAGCCGGCCGCGGCTTTCCTCTTCTAAGGATAGCAAACCGTCAAGCACAGCTTCCTCCTCCTCCTTGTCCTTTAACTCTTCCTCCAAGGATAATAGCCCGTCCACCAATTCCTCCACCAGCAGGTCCTCCGGGCATGACACAGGCAAGCATCGAAACAGCCCTGAGGCCGCCAT
80160 240 320 400 480 560
181 161 241 321 401 481 561
aminoacid
HBZ
HBZ SI
KAKQHSARKEKMQELG
EKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAE
LRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEE
KRKEEEKARRRRRAEKKAADVARRK
RRERKWRQGAE
Home
hTLV-1 genome dashboard
hbz
nucleotide
HBZ
50100 150 200
HBZ
151 101 151 201
MVNFVSAGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRLEAMWLQ
HBZ SI
aminoacid
HBZ
HBZ
HBZ
HBZ SI
DOMAINS
MOTIFS
PTMS
KAKQHSARKEKMQELG
EKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAE
LRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEE
KRKEEEKARRRRRAEKKAADVARRK
RRERKWRQGAE
Home
hTLV-1 genome dashboard
hbz
nucleotide
HBZ
50100 150 200
HBZ
151 101 151 201
MVNFVSAGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGR
HBZ SI
LRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEK
aminoacid
QTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELG
HBZ
HBZ
HBZ
IDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQ
HBZ SI
DOMAINS
GRLEAMWLQ
MOTIFS
PTMS
KAKQHSARKEKMQELG
EKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAE
LRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEE
KRKEEEKARRRRRAEKKAADVARRK
RRERKWRQGAE
Home
hTLV-1 genome dashboard
hbz
nucleotide
HBZ
50100 150 200
HBZ
151 101 151 201
MVNFVSAGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRLEAMWLQ
VDGLL
LDGL
HBZ SI
KRKRKK
aminoacid
RRRRR
EQERRE
HBZ
HBZ
HBZ
HBZ SI
DOMAINS
MOTIFS
PTMS
KAKQHSARKEKMQELG
EKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAE
LRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEE
KRKEEEKARRRRRAEKKAADVARRK
RRERKWRQGAE
Home
hTLV-1 genome dashboard
hbz
nucleotide
HBZ
50100 150 200
HBZ
151 101 151 201
GLFRCL
SCPE
SLEE
MVNFVSAGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRLEAMWLQ
HBZ SI
SLEE
THR
aminoacid
GAEKAK
HBZ
HBZ
HBZ
SAR
LEGEVESLEAERRKLLQEKEDL
HBZ SI
DOMAINS
MOTIFS
PTMS
Home
hTLV-1 genome dashboard
hbz
nucleotide
HBZ SI
50100 150 200
HBZ
151 101 151 201
MAASGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRLEAMWLQ
HBZ SI
aminoacid
HBZ
HBZ SI
HBZ
HBZ SI
DOMAINS
MOTIFS
PTMS
Home
hTLV-1 genome dashboard
hbz
nucleotide
HBZ SI
50100 150 200
HBZ
151 101 151 201
MAASGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRR
HBZ SI
GPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTA
aminoacid
EYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDG
HBZ
HBZ SI
HBZ
YTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRL
HBZ SI
DOMAINS
EAMWLQ
MOTIFS
PTMS
Home
hTLV-1 genome dashboard
hbz
nucleotide
HBZ SI
50100 150 200
HBZ
151 101 151 201
MAASGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRLEAMWLQ
VDGLL
LDGLL
HBZ SI
KRKRKK
aminoacid
EQERRE
RRRRR
HBZ
HBZ SI
HBZ
HBZ SI
DOMAINS
MOTIFS
PTMS
Home
hTLV-1 genome dashboard
hbz
nucleotide
HBZ SI
50100 150 200
HBZ
151 101 151 201
SL
GLFRCL
SLEE
SCPE
SCPE
MAASGLFRCLPVSCPEDLLVEELVDGLLSLEEELKDKEEEEAVLDGLLSLEEESRGRLRRGPPGEKAPPRGETHRDRQRRAEEKRKRKKEREKEEEKQTAEYLKRKEEEKARRRRRAEKKAADVARRKQEEQERRERKWRQGAEKAKQHSARKEKMQELGIDGYTRQLEGEVESLEAERRKLLQEKEDLMGEVNYWQGRLEAMWLQ
HBZ SI
THR
EE
aminoacid
GAEKAK
HBZ
HBZ SI
HBZ
LEGEVESLEAERRKLLQEKEDL
AR
HBZ SI
DOMAINS
MOTIFS
PTMS